BMRB Entry 17171

Name: The chemical shift assignment of the SWIRM domain of LSD1
Published: 2012-08-01

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17171

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The chemical shift assignment of the SWIRM domain of LSD1

Deposition date:

2010-09-08

Original release date:

2012-08-01

Authors:

LIU, Changdong; LO, Ka Ching; ZHU, Guang; SZE, Kong Hung

Citation:

Citation: LIU, Changdong; LUO, Raymond; SZE, Kong Hung. "The chemical shift assignment of the SWIRM domain of LSD1" The BMRB entry is the only known published source for the data..

Assembly members:

Assembly members:
SWIRM, polymer, 102 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGex-4T

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SWIRM: GSVEGAAFQSRLPHDRMTSQ EAACFPDIISGPQQTQKVFL FIRNRTLQLWLDNPKIQLTF EATLQQLEAPYNSDTVLVHR VHSYLERHGLINFGIYKRIK PL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	370
15N chemical shifts	89
1H chemical shifts	678

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SWIRM	1

Entities:

Entity 1, SWIRM 102 residues - Formula weight is not available

1

GLY

SER

VAL

GLU

GLY

ALA

PHE

GLN

SER

2

ARG

LEU

PRO

HIS

ASP

ARG

MET

THR

SER

GLN

3

GLU

ALA

CYS

PHE

PRO

ASP

ILE

SER

4

GLY

PRO

GLN

THR

GLN

LYS

VAL

PHE

LEU

5

PHE

ILE

ARG

ASN

ARG

THR

LEU

GLN

LEU

TRP

6

LEU

ASP

ASN

PRO

LYS

ILE

GLN

LEU

THR

PHE

7

GLU

ALA

THR

LEU

GLN

LEU

GLU

ALA

PRO

8

TYR

ASN

SER

ASP

THR

VAL

LEU

VAL

HIS

ARG

9

VAL

HIS

SER

TYR

LEU

GLU

ARG

HIS

GLY

LEU

10

ILE

ASN

PHE

GLY

ILE

TYR

LYS

ARG

ILE

LYS

11

PRO

LEU

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D HCCH-COSY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

Related Database Links:

BMRB	10011
PDB	2COM 2DW4 2EJR 2H94 2HKO 2IW5 2L3D 2UXN 2UXX 2V1D 2X0L 2XAF 2XAG 2XAH 2XAJ 2XAQ 2XAS 2Y48 2Z3Y 2Z5U 3ABT 3ABU 3ZMS 3ZMT 3ZMU 3ZMV 3ZMZ 3ZN0 3ZN1 4BAY 4CZZ 4KUM 4UV8 4UV9 4UVA 4UVB 4UVC 4UXN
DBJ	BAA25527 BAC97980 BAF83017 BAG09773
EMBL	CAH90077
GB	AAH16639 AAH40194 AAH48134 AAH59885 AAI51757
REF	NP_001009999 NP_001106157 NP_001123570 NP_001252568 NP_055828
SP	O60341 Q6ZQ88
TPG	DAA32187 DAA32188
AlphaFold	O60341 Q6ZQ88

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 17171

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: