BMRB Entry 16986

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PDB ID: 2kxe
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16986
MolProbity Validation Chart

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Title:
N-terminal domain of the DP1 subunit of an archaeal D-family DNA polymerase
Deposition date:
2010-06-09
Original release date:
2010-07-26
Authors:
Yamasaki, Kazuhiko; Matsui, Ikuo
Citation:

Citation: Yamasaki, Kazuhiko; Urushibata, Yuji; Yamasaki, Tomoko; Arisaka, Fumio; Matsui, Ikuo. "Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases."  FEBS Lett. 584, 3370-3375 (2010).
PubMed: 20598295

Assembly members:

Assembly members:
entity, polymer, 75 residues, 8252.611 Da.

Natural source:

Natural source:   Common Name: Pyrococcus horikoshii   Taxonomy ID: 53953   Superkingdom: Archaea   Kingdom: not available   Genus/species: Pyrococcus horikoshii

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: GSHMDEFVKGLMKNGYLITP SAYYLLVGHFNEGKFSLIEL IKFAKSRETFIIDDEIANEF LKSIGAEVELPQEIK

Data sets:
Data typeCount
13C chemical shifts183
15N chemical shifts72
1H chemical shifts537

Additional metadata:

  • Assembly
  • Samples and Experiments
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  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DP1 subunit1

Entities:

Entity 1, DP1 subunit 75 residues - 8252.611 Da.

1   GLYSERHISMETASPGLUPHEVALLYSGLY
2   LEUMETLYSASNGLYTYRLEUILETHRPRO
3   SERALATYRTYRLEULEUVALGLYHISPHE
4   ASNGLUGLYLYSPHESERLEUILEGLULEU
5   ILELYSPHEALALYSSERARGGLUTHRPHE
6   ILEILEASPASPGLUILEALAASNGLUPHE
7   LEULYSSERILEGLYALAGLUVALGLULEU
8   PROGLNGLUILELYS

Related Database Links:

PDB 2KXE
DBJ BAA29192
REF WP_010884237
SP O57863
AlphaFold O57863

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks