BMRB Entry 16878

Name: NMR Structure of AIRE PHD Finger
Published: 2010-07-27

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PDB ID: 2kft
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16878
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure of AIRE PHD Finger

Deposition date:

2010-04-18

Original release date:

2010-07-27

Authors:

Chakravarty, Suvobrata; Zeng, Lei; ZHOU, MING-MING

Citation:

Citation: Chakravarty, Suvobrata; Zeng, Lei; Zhou, Ming-Ming. "Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator." Structure 17, 670-679 (2009).
PubMed: 19446523

Assembly members:

Assembly members:
AIRE_PHD_finger_1, polymer, 56 residues, 6019.845 Da.
Histone_H3_1-20Cys, polymer, 21 residues, 2293.733 Da.
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX-4T3

Entity Sequences (FASTA):

Entity Sequences (FASTA):
AIRE_PHD_finger_1: GSKNEDECAVCRDGGELICC DGCPRAFHLACLSPPLREIP SGTWRCSSCLQATVQE
Histone_H3_1-20Cys: ARTKQTARKSTGGKAPRKQL C

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	163
15N chemical shifts	47
1H chemical shifts	318

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AIRE_PHD_finger_1	1
2	Histone_H3_1-20Cys	2
3	ZINC_1	3
4	ZINC_2	3

Entities:

Entity 1, AIRE_PHD_finger_1 56 residues - 6019.845 Da.

1

GLY

SER

LYS

ASN

GLU

ASP

GLU

CYS

ALA

VAL

2

CYS

ARG

ASP

GLY

GLU

LEU

ILE

CYS

3

ASP

GLY

CYS

PRO

ARG

ALA

PHE

HIS

LEU

ALA

4

CYS

LEU

SER

PRO

LEU

ARG

GLU

ILE

PRO

5

SER

GLY

THR

TRP

ARG

CYS

SER

CYS

LEU

6

GLN

ALA

THR

VAL

GLN

GLU

Entity 2, Histone_H3_1-20Cys 21 residues - 2293.733 Da.

1

ALA

ARG

THR

LYS

GLN

THR

ALA

ARG

LYS

SER

2

THR

GLY

LYS

ALA

PRO

ARG

LYS

GLN

LEU

3

CYS

Entity 3, ZINC_1 - Zn - 65.409 Da.

1

ZN

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D HN(COCA)CB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Related Database Links:

.	NP_000374
PDB	2KFT 2KFT 2KWK 2YBA 3A1B
DBJ	BAA23988 BAA23989 BAA23990 BAA23991 BAA23992 BAB27616 BAG57022 GAC74844
EMBL	CAA08759 CAB10790 CAG04369 CAG11543 CAP39588 CAP53898 CAP72538
GB	AAI37269 AAI37271 AIC54015 EAX09441 EAX09442 AAH67493 AAR37358 AAT97343 AAT97344 AAX52110
REF	NP_000374 XP_003419041 XP_004062941 XP_006876868 XP_008975805 NP_001281095 XP_001061048 XP_001249529 XP_001712222 XP_002029274
SP	O43918
BMRB	11358 16694
TPG	DAA24942 DAA45649
AlphaFold	O43918

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SPARKY: Backbone or all simulated peaks

BMRB Entry 16878

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: