BMRB Entry 16622

Name: Bergerac-SH3: frustation induced by stabilizing the folding nucleus
Published: 2012-08-03

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16622

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Bergerac-SH3: frustation induced by stabilizing the folding nucleus

Deposition date:

2009-12-03

Original release date:

2012-08-03

Authors:

Khristoforov, Vladimir; Prokhorov, Dmitry; Timchenko, Maria; Kudrevatykh, Yuri; Gushchina, Lyubov; Filimonov, Vladimir; Kutyshenko, Viktor

Citation:

Citation: Kutyshenko, V.; Gushchina, L.; Khristoforov, V.; Prokhorov, D.; Timchenko, M.; Kudrevatykh, Iu.; Fediukina, D.; Filimonov, V.. "NMR structure and dynamics of the chimeric protein SH3-F2" Mol. Biol. (Mosk). 44, 1064-1074 (2010).
PubMed: 21290828

Assembly members:

Assembly members:
SHA-D, polymer, 70 residues, 8124.332 Da.

Natural source:

Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pBAT-4

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SHA-D: MDETGKELVLALYDYQEKSP REVTMKKGDILTLLNSTNKD WWKVEVKATANDKTYERQGF VPAAYVKKLD

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	323
15N chemical shifts	74
1H chemical shifts	501

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 monomer	1

Entities:

Entity 1, SH3 monomer 70 residues - 8124.332 Da.

1	MET	ASP	GLU	THR	GLY	LYS	GLU	LEU	VAL	LEU
2	ALA	LEU	TYR	ASP	TYR	GLN	GLU	LYS	SER	PRO
3	ARG	GLU	VAL	THR	MET	LYS	LYS	GLY	ASP	ILE
4	LEU	THR	LEU	LEU	ASN	SER	THR	ASN	LYS	ASP
5	TRP	TRP	LYS	VAL	GLU	VAL	LYS	ALA	THR	ALA
6	ASN	ASP	LYS	THR	TYR	GLU	ARG	GLN	GLY	PHE
7	VAL	PRO	ALA	ALA	TYR	VAL	LYS	LYS	LEU	ASP

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CC(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY-ali	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY-aro	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY-ali	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY-aro	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1

BMRB	11026
PDB	2KR3 2RMO
REF	XP_011816868 XP_012717136

BMRB Entry 16622

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	MET	ASP	GLU	THR	GLY	LYS	GLU	LEU	VAL	LEU
2	ALA	LEU	TYR	ASP	TYR	GLN	GLU	LYS	SER	PRO
3	ARG	GLU	VAL	THR	MET	LYS	LYS	GLY	ASP	ILE
4	LEU	THR	LEU	LEU	ASN	SER	THR	ASN	LYS	ASP
5	TRP	TRP	LYS	VAL	GLU	VAL	LYS	ALA	THR	ALA
6	ASN	ASP	LYS	THR	TYR	GLU	ARG	GLN	GLY	PHE
7	VAL	PRO	ALA	ALA	TYR	VAL	LYS	LYS	LEU	ASP

1	MET	ASP	GLU	THR	GLY	LYS	GLU	LEU	VAL	LEU
2	ALA	LEU	TYR	ASP	TYR	GLN	GLU	LYS	SER	PRO
3	ARG	GLU	VAL	THR	MET	LYS	LYS	GLY	ASP	ILE
4	LEU	THR	LEU	LEU	ASN	SER	THR	ASN	LYS	ASP
5	TRP	TRP	LYS	VAL	GLU	VAL	LYS	ALA	THR	ALA
6	ASN	ASP	LYS	THR	TYR	GLU	ARG	GLN	GLY	PHE
7	VAL	PRO	ALA	ALA	TYR	VAL	LYS	LYS	LEU	ASP

1	MET	ASP	GLU	THR	GLY	LYS	GLU	LEU	VAL	LEU
2	ALA	LEU	TYR	ASP	TYR	GLN	GLU	LYS	SER	PRO
3	ARG	GLU	VAL	THR	MET	LYS	LYS	GLY	ASP	ILE
4	LEU	THR	LEU	LEU	ASN	SER	THR	ASN	LYS	ASP
5	TRP	TRP	LYS	VAL	GLU	VAL	LYS	ALA	THR	ALA
6	ASN	ASP	LYS	THR	TYR	GLU	ARG	GLN	GLY	PHE
7	VAL	PRO	ALA	ALA	TYR	VAL	LYS	LYS	LEU	ASP