BMRB Entry 16249

Name: The carboxy-terminal non-repetitive domain of a spider dragline silk protein regulates nucleation of silk assembly
Published: 2010-05-07

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PDB ID: 2khm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16249
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The carboxy-terminal non-repetitive domain of a spider dragline silk protein regulates nucleation of silk assembly

Deposition date:

2009-04-09

Original release date:

2010-05-07

Authors:

Hagn, Franz; Eisoldt, Lukas; Hardy, John; Vendrely, Charlotte; Coles, Murray; Scheibel, Thomas; Kessler, Horst

Citation:

Citation: Hagn, Franz; Eisoldt, Lukas; Hardy, John; Vendrely, Charlotte; Coles, Murray; Scheibel, Thomas; Kessler, Horst. "A conserved spider silk domain acts as a molecular switch that controls fibre assembly." Nature 465, 239-242 (2010).
PubMed: 20463741

Assembly members:

Assembly members:
NR3, polymer, 140 residues, 13329.825 Da.

Natural source:

Natural source: Common Name: spiders Taxonomy ID: 45920 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Araneus Diadematus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
NR3: MASMTGGQQMGRGSMGAASA AVSVGGYGPQSSSAPVASAA ASRLSSPAASSRVSSAVSSL VSSGPTNQAALSNTISSVVS QVSASNPGLSGCDVLVQALL EVVSALVSILGSSSIGQINY GASAQYTQMVGQSVAQALAG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	517
15N chemical shifts	148
1H chemical shifts	860

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	NR3,chain_1	1
2	NR3,chain_2	1

Entities:

Entity 1, NR3,chain_1 140 residues - 13329.825 Da.

1	MET	ALA	SER	MET	THR	GLY	GLY	GLN	GLN	MET
2	GLY	ARG	GLY	SER	MET	GLY	ALA	ALA	SER	ALA
3	ALA	VAL	SER	VAL	GLY	GLY	TYR	GLY	PRO	GLN
4	SER	SER	SER	ALA	PRO	VAL	ALA	SER	ALA	ALA
5	ALA	SER	ARG	LEU	SER	SER	PRO	ALA	ALA	SER
6	SER	ARG	VAL	SER	SER	ALA	VAL	SER	SER	LEU
7	VAL	SER	SER	GLY	PRO	THR	ASN	GLN	ALA	ALA
8	LEU	SER	ASN	THR	ILE	SER	SER	VAL	VAL	SER
9	GLN	VAL	SER	ALA	SER	ASN	PRO	GLY	LEU	SER
10	GLY	CYS	ASP	VAL	LEU	VAL	GLN	ALA	LEU	LEU
11	GLU	VAL	VAL	SER	ALA	LEU	VAL	SER	ILE	LEU
12	GLY	SER	SER	SER	ILE	GLY	GLN	ILE	ASN	TYR
13	GLY	ALA	SER	ALA	GLN	TYR	THR	GLN	MET	VAL
14	GLY	GLN	SER	VAL	ALA	GLN	ALA	LEU	ALA	GLY

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_4	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_4	isotropic	sample_conditions_1
3D HNHB	sample_4	isotropic	sample_conditions_1
3D CCH-COSY	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_4	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D CNH NOESY	sample_1	isotropic	sample_conditions_1
3D NNH NOESY	sample_4	isotropic	sample_conditions_1
3D CCH NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_1
filtered NOESY	sample_3	isotropic	sample_conditions_1

BMRB Entry 16249

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	MET	ALA	SER	MET	THR	GLY	GLY	GLN	GLN	MET
2	GLY	ARG	GLY	SER	MET	GLY	ALA	ALA	SER	ALA
3	ALA	VAL	SER	VAL	GLY	GLY	TYR	GLY	PRO	GLN
4	SER	SER	SER	ALA	PRO	VAL	ALA	SER	ALA	ALA
5	ALA	SER	ARG	LEU	SER	SER	PRO	ALA	ALA	SER
6	SER	ARG	VAL	SER	SER	ALA	VAL	SER	SER	LEU
7	VAL	SER	SER	GLY	PRO	THR	ASN	GLN	ALA	ALA
8	LEU	SER	ASN	THR	ILE	SER	SER	VAL	VAL	SER
9	GLN	VAL	SER	ALA	SER	ASN	PRO	GLY	LEU	SER
10	GLY	CYS	ASP	VAL	LEU	VAL	GLN	ALA	LEU	LEU
11	GLU	VAL	VAL	SER	ALA	LEU	VAL	SER	ILE	LEU
12	GLY	SER	SER	SER	ILE	GLY	GLN	ILE	ASN	TYR
13	GLY	ALA	SER	ALA	GLN	TYR	THR	GLN	MET	VAL
14	GLY	GLN	SER	VAL	ALA	GLN	ALA	LEU	ALA	GLY

1	MET	ALA	SER	MET	THR	GLY	GLY	GLN	GLN	MET
2	GLY	ARG	GLY	SER	MET	GLY	ALA	ALA	SER	ALA
3	ALA	VAL	SER	VAL	GLY	GLY	TYR	GLY	PRO	GLN
4	SER	SER	SER	ALA	PRO	VAL	ALA	SER	ALA	ALA
5	ALA	SER	ARG	LEU	SER	SER	PRO	ALA	ALA	SER
6	SER	ARG	VAL	SER	SER	ALA	VAL	SER	SER	LEU
7	VAL	SER	SER	GLY	PRO	THR	ASN	GLN	ALA	ALA
8	LEU	SER	ASN	THR	ILE	SER	SER	VAL	VAL	SER
9	GLN	VAL	SER	ALA	SER	ASN	PRO	GLY	LEU	SER
10	GLY	CYS	ASP	VAL	LEU	VAL	GLN	ALA	LEU	LEU
11	GLU	VAL	VAL	SER	ALA	LEU	VAL	SER	ILE	LEU
12	GLY	SER	SER	SER	ILE	GLY	GLN	ILE	ASN	TYR
13	GLY	ALA	SER	ALA	GLN	TYR	THR	GLN	MET	VAL
14	GLY	GLN	SER	VAL	ALA	GLN	ALA	LEU	ALA	GLY

1	MET	ALA	SER	MET	THR	GLY	GLY	GLN	GLN	MET
2	GLY	ARG	GLY	SER	MET	GLY	ALA	ALA	SER	ALA
3	ALA	VAL	SER	VAL	GLY	GLY	TYR	GLY	PRO	GLN
4	SER	SER	SER	ALA	PRO	VAL	ALA	SER	ALA	ALA
5	ALA	SER	ARG	LEU	SER	SER	PRO	ALA	ALA	SER
6	SER	ARG	VAL	SER	SER	ALA	VAL	SER	SER	LEU
7	VAL	SER	SER	GLY	PRO	THR	ASN	GLN	ALA	ALA
8	LEU	SER	ASN	THR	ILE	SER	SER	VAL	VAL	SER
9	GLN	VAL	SER	ALA	SER	ASN	PRO	GLY	LEU	SER
10	GLY	CYS	ASP	VAL	LEU	VAL	GLN	ALA	LEU	LEU
11	GLU	VAL	VAL	SER	ALA	LEU	VAL	SER	ILE	LEU
12	GLY	SER	SER	SER	ILE	GLY	GLN	ILE	ASN	TYR
13	GLY	ALA	SER	ALA	GLN	TYR	THR	GLN	MET	VAL
14	GLY	GLN	SER	VAL	ALA	GLN	ALA	LEU	ALA	GLY