BMRB Entry 16192

Name: NMR structure of the first qRRM of hnRNP F in complex with AGGGAU G-tract RNA
Published: 2010-06-15

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16192

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of the first qRRM of hnRNP F in complex with AGGGAU G-tract RNA

Deposition date:

2009-03-02

Original release date:

2010-06-15

Authors:

Allain, Frederic; Dominguez, Cyril

Citation:

Citation: Dominguez, Cyril; Fisette, Jean-Francois; Chabot, Benoit; Allain, Frederic H-T. "Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs." Nat. Struct. Mol. Biol. 17, 853-861 (2010).
PubMed: 20526337

Assembly members:

Assembly members:
entity_1, polymer, 6 residues, 1955.251 Da.
first qRRM of hnRNP F, polymer, 102 residues, 11475.048 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: AGGGAU
first qRRM of hnRNP F: MMLGPEGGEGFVVKLRGLPW SCSVEDVQNFLSDCTIHDGA AGVHFIYTREGRQSGEAFVE LGSEDDVKMALKKDRESMGH RYIEVFKSHRTEMDWVLKHS GP

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	258
15N chemical shifts	102
1H chemical shifts	685

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AGGGAU G-tract RNA	1
2	first qRRM of hnRNP F	2

Entities:

Entity 1, AGGGAU G-tract RNA 6 residues - 1955.251 Da.

1

A

G

A

U

Entity 2, first qRRM of hnRNP F 102 residues - 11475.048 Da.

1

MET

LEU

GLY

PRO

GLU

GLY

GLU

GLY

2

PHE

VAL

LYS

LEU

ARG

GLY

LEU

PRO

TRP

3

SER

CYS

SER

VAL

GLU

ASP

VAL

GLN

ASN

PHE

4

LEU

SER

ASP

CYS

THR

ILE

HIS

ASP

GLY

ALA

5

ALA

GLY

VAL

HIS

PHE

ILE

TYR

THR

ARG

GLU

6

GLY

ARG

GLN

SER

GLY

GLU

ALA

PHE

VAL

GLU

7

LEU

GLY

SER

GLU

ASP

VAL

LYS

MET

ALA

8

LEU

LYS

ASP

ARG

GLU

SER

MET

GLY

HIS

9

ARG

TYR

ILE

GLU

VAL

PHE

LYS

SER

HIS

ARG

10

THR

GLU

MET

ASP

TRP

VAL

LEU

LYS

HIS

SER

11

GLY

PRO

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

BMRB Entry 16192

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

SWS	.
PDB	2HGL 2KFY