BMRB Entry 16142

Click here to enlarge.

PDB ID: 2kec
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR16142
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Structure of SDF-1/CXCL12
Deposition date:
2009-01-28
Original release date:
2009-06-25
Authors:
Volkman, B.; Veldkamp, C.; Peterson, F.
Citation:

Citation: Veldkamp, C.; Ziarek, J.; Su, J.; Basnet, H.; Lennertz, R.; Weiner, J.; Peterson, F.; Baker, J.; Volkman, B.. "Monomeric structure of the cardioprotective chemokine SDF-1/CXCL12"  Protein Sci. 18, 1359-1369 (2009).
PubMed: 19551879

Assembly members:

Assembly members:
CXCL12/SDF1-alpha, polymer, 70 residues, 8166.771 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: PQE30

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CXCL12/SDF1-alpha: GMKPVSLSYRCPCRFFESHV ARANVKHLKILNTPNCALQI VARLKNNNRQVCIDPKLKWI QEYLEKALNK

Data sets:
Data typeCount
13C chemical shifts319
15N chemical shifts76
1H chemical shifts528

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CXCL12/SDF1-alpha1

Entities:

Entity 1, CXCL12/SDF1-alpha 70 residues - 8166.771 Da.

1   GLYMETLYSPROVALSERLEUSERTYRARG
2   CYSPROCYSARGPHEPHEGLUSERHISVAL
3   ALAARGALAASNVALLYSHISLEULYSILE
4   LEUASNTHRPROASNCYSALALEUGLNILE
5   VALALAARGLEULYSASNASNASNARGGLN
6   VALCYSILEASPPROLYSLEULYSTRPILE
7   GLNGLUTYRLEUGLULYSALALEUASNLYS

Related Database Links:

BMRB 15633 15635 15636 15637 16143 16145 16519
PDB 1A15 1QG7 1SDF 1VMC 2J7Z 2K01 2K03 2K04 2K05 2KEC 2KED 2KEE 2KOL 2NWG 2SDF 3GV3 3HP3 4LMQ 4UAI
DBJ BAA04648 BAA07862 BAA07863 BAA28601 BAA28602
EMBL CAE11785 CAG29279 CAH91884 CAJ18596
GB AAA40100 AAA40101 AAA97434 AAB32650 AAB39332
PIR I53416
REF NP_000600 NP_001009580 NP_001009847 NP_001012495 NP_001028106
SP O62657 P40224 P48061
AlphaFold O62657 P40224 P48061

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks