BMRB Entry 16109
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PDB ID: 2kdb
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR16109
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Doherty, Ryan; Wu, Bin; Fares, Christophe; Lemak, Alexander; Gutmanas, Aleksandras; Semesi, Anthony; Yee, Adelinda; Arrowsmith, Cheryl; Dhe-Paganon, Sirano. "Structure of human homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2 (Herpud2 or Herp)" .
Assembly members:
humna_ubiquitin-like_domain_of_Herp, polymer, 99 residues, 9000.604 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: p15Tv lic
Entity Sequences (FASTA):
humna_ubiquitin-like_domain_of_Herp: MGSSHHHHHHSSGRENLYFQ
GHPVTLIIKAPNQKYSDQTI
SCFLNWTVGKLKTHLSNVYP
SKPLTKDQRLVYSGRLLPDH
LQLKDILRKQDEYHMVHLV
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 349 |
| 15N chemical shifts | 73 |
| 1H chemical shifts | 580 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | humna_ubiquitin-like_domain_of_Herp | 1 |
Entities:
Entity 1, humna_ubiquitin-like_domain_of_Herp 99 residues - 9000.604 Da.
| 1 | MET | GLY | SER | SER | HIS | HIS | HIS | HIS | HIS | HIS | ||||
| 2 | SER | SER | GLY | ARG | GLU | ASN | LEU | TYR | PHE | GLN | ||||
| 3 | GLY | HIS | PRO | VAL | THR | LEU | ILE | ILE | LYS | ALA | ||||
| 4 | PRO | ASN | GLN | LYS | TYR | SER | ASP | GLN | THR | ILE | ||||
| 5 | SER | CYS | PHE | LEU | ASN | TRP | THR | VAL | GLY | LYS | ||||
| 6 | LEU | LYS | THR | HIS | LEU | SER | ASN | VAL | TYR | PRO | ||||
| 7 | SER | LYS | PRO | LEU | THR | LYS | ASP | GLN | ARG | LEU | ||||
| 8 | VAL | TYR | SER | GLY | ARG | LEU | LEU | PRO | ASP | HIS | ||||
| 9 | LEU | GLN | LEU | LYS | ASP | ILE | LEU | ARG | LYS | GLN | ||||
| 10 | ASP | GLU | TYR | HIS | MET | VAL | HIS | LEU | VAL |
Related Database Links:
| PDB | 2KDB |
| DBJ | BAA95064 BAB31889 BAE22730 BAE89340 BAG38050 |
| GB | AAH05091 AAH20264 AAH29691 AAH43693 AAH81861 |
| REF | NP_001020159 NP_001069026 NP_001270669 NP_065611 NP_071768 |
| SP | Q0P5H8 Q66HH4 Q9BSE4 Q9JJC9 |
| TPG | DAA30580 |
| AlphaFold | Q0P5H8 Q66HH4 Q9BSE4 Q9JJC9 |
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SPARKY: Backbone
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