BMRB Entry 15356

Name: Solution NMR Structure of Human Myeloid Differentiation Primary Response (MyD88). Northeast Structural Genomics target HR2869A.
Published: 2007-07-24

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PDB ID: 2js7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15356
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of Human Myeloid Differentiation Primary Response (MyD88). Northeast Structural Genomics target HR2869A.

Deposition date:

2007-06-29

Original release date:

2007-07-24

Authors:

Rossi, Paolo; Ramelot, Theresa; Ciano, Melissa; Ho, Chi-Kent; Ma, Li-Chung; Xiao, Rong; Acton, Thomas; Kennedy, Michael; Tong, Liang; Montelione, Gaetano

Citation:

Citation: Rossi, Paolo; Xiao, Rong; Acton, Thomas; Tong, Liang; Montelione, Gaetano. "Solution NMR Structure of Human Myeloid Differentiation Primary Response (MyD88). Northeast Structural Genomics target HR2869A." .

Assembly members:

Assembly members:
HR2869A, polymer, 160 residues, 18769.064 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: HR2869-NC5j

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HR2869A: MGITTLDDPLGHMPERFDAF ICYCPSDIQFVQEMIRQLEQ TNYRLKLCVSDRDVLPGTCV WSIASELIEKRCRRMVVVVS DDYLQSKECDFQTKFALSLS PGAHQKRLIPIKYKAMKKEF PSILRFITVCDYTNPCTKSW FWTRLAKALSLPLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list

Data type	Count
13C chemical shifts	708
15N chemical shifts	155
1H chemical shifts	1140

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HR2869A	1

Entities:

Entity 1, HR2869A 160 residues - 18769.064 Da.

Native sequence numbering 146-296 (excluding cloning artifacts and C-term His tag)

1	MET	GLY	ILE	THR	THR	LEU	ASP	ASP	PRO	LEU
2	GLY	HIS	MET	PRO	GLU	ARG	PHE	ASP	ALA	PHE
3	ILE	CYS	TYR	CYS	PRO	SER	ASP	ILE	GLN	PHE
4	VAL	GLN	GLU	MET	ILE	ARG	GLN	LEU	GLU	GLN
5	THR	ASN	TYR	ARG	LEU	LYS	LEU	CYS	VAL	SER
6	ASP	ARG	ASP	VAL	LEU	PRO	GLY	THR	CYS	VAL
7	TRP	SER	ILE	ALA	SER	GLU	LEU	ILE	GLU	LYS
8	ARG	CYS	ARG	ARG	MET	VAL	VAL	VAL	VAL	SER
9	ASP	ASP	TYR	LEU	GLN	SER	LYS	GLU	CYS	ASP
10	PHE	GLN	THR	LYS	PHE	ALA	LEU	SER	LEU	SER
11	PRO	GLY	ALA	HIS	GLN	LYS	ARG	LEU	ILE	PRO
12	ILE	LYS	TYR	LYS	ALA	MET	LYS	LYS	GLU	PHE
13	PRO	SER	ILE	LEU	ARG	PHE	ILE	THR	VAL	CYS
14	ASP	TYR	THR	ASN	PRO	CYS	THR	LYS	SER	TRP
15	PHE	TRP	THR	ARG	LEU	ALA	LYS	ALA	LEU	SER
16	LEU	PRO	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCOCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC stereospecific VL	sample_3	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
H/D exch	sample_2	isotropic	sample_conditions_1
HETnoe	sample_3	isotropic	sample_conditions_1
T1/T2	sample_3	isotropic	sample_conditions_1

BMRB	11078
PDB	2JS7 2Z5V 4EO7
DBJ	BAE89833 BAG55247 BAG55248 BAG55249 BAG55250
GB	AAB49967 AAC50954 AAH13589 AAP36040 AAP36509
REF	NP_001123935 NP_001124153 NP_001166039 NP_001266118 NP_001266529
SP	B3Y678 B3Y679 B3Y680 B3Y681 B3Y682
AlphaFold	B3Y678 B3Y679 B3Y680 B3Y681 B3Y682

BMRB Entry 15356

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	MET	GLY	ILE	THR	THR	LEU	ASP	ASP	PRO	LEU
2	GLY	HIS	MET	PRO	GLU	ARG	PHE	ASP	ALA	PHE
3	ILE	CYS	TYR	CYS	PRO	SER	ASP	ILE	GLN	PHE
4	VAL	GLN	GLU	MET	ILE	ARG	GLN	LEU	GLU	GLN
5	THR	ASN	TYR	ARG	LEU	LYS	LEU	CYS	VAL	SER
6	ASP	ARG	ASP	VAL	LEU	PRO	GLY	THR	CYS	VAL
7	TRP	SER	ILE	ALA	SER	GLU	LEU	ILE	GLU	LYS
8	ARG	CYS	ARG	ARG	MET	VAL	VAL	VAL	VAL	SER
9	ASP	ASP	TYR	LEU	GLN	SER	LYS	GLU	CYS	ASP
10	PHE	GLN	THR	LYS	PHE	ALA	LEU	SER	LEU	SER
11	PRO	GLY	ALA	HIS	GLN	LYS	ARG	LEU	ILE	PRO
12	ILE	LYS	TYR	LYS	ALA	MET	LYS	LYS	GLU	PHE
13	PRO	SER	ILE	LEU	ARG	PHE	ILE	THR	VAL	CYS
14	ASP	TYR	THR	ASN	PRO	CYS	THR	LYS	SER	TRP
15	PHE	TRP	THR	ARG	LEU	ALA	LYS	ALA	LEU	SER
16	LEU	PRO	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	GLY	ILE	THR	THR	LEU	ASP	ASP	PRO	LEU
2	GLY	HIS	MET	PRO	GLU	ARG	PHE	ASP	ALA	PHE
3	ILE	CYS	TYR	CYS	PRO	SER	ASP	ILE	GLN	PHE
4	VAL	GLN	GLU	MET	ILE	ARG	GLN	LEU	GLU	GLN
5	THR	ASN	TYR	ARG	LEU	LYS	LEU	CYS	VAL	SER
6	ASP	ARG	ASP	VAL	LEU	PRO	GLY	THR	CYS	VAL
7	TRP	SER	ILE	ALA	SER	GLU	LEU	ILE	GLU	LYS
8	ARG	CYS	ARG	ARG	MET	VAL	VAL	VAL	VAL	SER
9	ASP	ASP	TYR	LEU	GLN	SER	LYS	GLU	CYS	ASP
10	PHE	GLN	THR	LYS	PHE	ALA	LEU	SER	LEU	SER
11	PRO	GLY	ALA	HIS	GLN	LYS	ARG	LEU	ILE	PRO
12	ILE	LYS	TYR	LYS	ALA	MET	LYS	LYS	GLU	PHE
13	PRO	SER	ILE	LEU	ARG	PHE	ILE	THR	VAL	CYS
14	ASP	TYR	THR	ASN	PRO	CYS	THR	LYS	SER	TRP
15	PHE	TRP	THR	ARG	LEU	ALA	LYS	ALA	LEU	SER
16	LEU	PRO	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	GLY	ILE	THR	THR	LEU	ASP	ASP	PRO	LEU
2	GLY	HIS	MET	PRO	GLU	ARG	PHE	ASP	ALA	PHE
3	ILE	CYS	TYR	CYS	PRO	SER	ASP	ILE	GLN	PHE
4	VAL	GLN	GLU	MET	ILE	ARG	GLN	LEU	GLU	GLN
5	THR	ASN	TYR	ARG	LEU	LYS	LEU	CYS	VAL	SER
6	ASP	ARG	ASP	VAL	LEU	PRO	GLY	THR	CYS	VAL
7	TRP	SER	ILE	ALA	SER	GLU	LEU	ILE	GLU	LYS
8	ARG	CYS	ARG	ARG	MET	VAL	VAL	VAL	VAL	SER
9	ASP	ASP	TYR	LEU	GLN	SER	LYS	GLU	CYS	ASP
10	PHE	GLN	THR	LYS	PHE	ALA	LEU	SER	LEU	SER
11	PRO	GLY	ALA	HIS	GLN	LYS	ARG	LEU	ILE	PRO
12	ILE	LYS	TYR	LYS	ALA	MET	LYS	LYS	GLU	PHE
13	PRO	SER	ILE	LEU	ARG	PHE	ILE	THR	VAL	CYS
14	ASP	TYR	THR	ASN	PRO	CYS	THR	LYS	SER	TRP
15	PHE	TRP	THR	ARG	LEU	ALA	LYS	ALA	LEU	SER
16	LEU	PRO	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS