BMRB Entry 15163

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR15163

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Title:
Backbone 1H, 13C, and 15N Chemical Shift Assignments for LARG PDZ domain in complex with C-terminal octa-peptide of Plexin B1
Deposition date:
2007-03-07
Original release date:
2008-06-27
Authors:
Liu, J.; Huang, H.; Yang, Y.; Wu, Jihui; Shi, Yunyu
Citation:

Citation: Liu, Jiangxin; Zhang, Jiahai; Yang, Yinshan; Huang, Hongda; Shen, Weiqun; Hu, Qi; Wang, Xingsheng; Wu, Jihui; Shi, Yunyu. "Conformational change upon ligand binding and dynamics of the PDZ domain from leukemia-associated Rho guanine nucleotide exchange factor"  Protein Sci. 17, 1003-1014 (2008).
PubMed: 18411422

Assembly members:

Assembly members:
Rho_guanine_nucleotide_exchange_factor_12, polymer, 89 residues, Formula weight is not available
C-terminal_peptide_of_Plexin-B1, polymer, 8 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET15b (+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Rho_guanine_nucleotide_exchange_factor_12: GSHMGLVQRCVIIQKDDNGF GLTVSGDNPVFVQSVKEDGA AMRAGVQTGDRIIKVNGTLV THSNHLEVVKLIKSGSYVAL TVQGRPPGS
C-terminal_peptide_of_Plexin-B1: VENKVTDL

Data sets:
Data typeCount
13C chemical shifts251
15N chemical shifts83
1H chemical shifts616

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1LARG PDZ domain1
2C-terminal sequence of Plexin B12

Entities:

Entity 1, LARG PDZ domain 89 residues - Formula weight is not available

1   GLYSERHISMETGLYLEUVALGLNARGCYS
2   VALILEILEGLNLYSASPASPASNGLYPHE
3   GLYLEUTHRVALSERGLYASPASNPROVAL
4   PHEVALGLNSERVALLYSGLUASPGLYALA
5   ALAMETARGALAGLYVALGLNTHRGLYASP
6   ARGILEILELYSVALASNGLYTHRLEUVAL
7   THRHISSERASNHISLEUGLUVALVALLYS
8   LEUILELYSSERGLYSERTYRVALALALEU
9   THRVALGLNGLYARGPROPROGLYSER

Entity 2, C-terminal sequence of Plexin B1 8 residues - Formula weight is not available

1   VALGLUASNLYSVALTHRASPLEU

Related Database Links:

BMRB 15168
PDB 2OMJ 2OS6
DBJ BAA20836 BAC65549 BAD89994 BAG57923 BAG65168
GB AAF36817 AAH63117 AAI52901 AAI56559 AAL87100
REF NP_001013264 NP_001116505 NP_001185594 NP_001288013 NP_056128
SP Q8R4H2 Q9NZN5
TPG DAA22316
AlphaFold Q8R4H2 Q9NZN5

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks