BMRB Entry 11353

Name: Solution structure of PHD domain in inhibitor of growth protein 3 (ING3)
Published: 2011-09-07

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PDB ID: 1x4i
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11353
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of PHD domain in inhibitor of growth protein 3 (ING3)

Deposition date:

2010-09-07

Original release date:

2011-09-07

Authors:

He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.

Citation:

Citation: He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.. "Solution structure of PHD domain in inhibitor of growth protein 3 (ING3)" .

Assembly members:

Assembly members:
PHD domain, polymer, 70 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040705-02

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PHD domain: GSSGSSGYCICNQVSYGEMV GCDNQDCPIEWFHYGCVGLT EAPKGKWYCPQCTAAMKRRG SRHKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	265
15N chemical shifts	64
1H chemical shifts	399

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PHD domain	1
2	ZINC ION no.1	2
3	ZINC ION no.2	2

Entities:

Entity 1, PHD domain 70 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	TYR	CYS	ILE
2	CYS	ASN	GLN	VAL	SER	TYR	GLY	GLU	MET	VAL
3	GLY	CYS	ASP	ASN	GLN	ASP	CYS	PRO	ILE	GLU
4	TRP	PHE	HIS	TYR	GLY	CYS	VAL	GLY	LEU	THR
5	GLU	ALA	PRO	LYS	GLY	LYS	TRP	TYR	CYS	PRO
6	GLN	CYS	THR	ALA	ALA	MET	LYS	ARG	ARG	GLY
7	SER	ARG	HIS	LYS	SER	GLY	PRO	SER	SER	GLY

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1

ZN

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

PDB	1X4I
DBJ	BAA90942 BAC38021 BAE43273 BAG57123 BAG73291
EMBL	CAF90810 CAG31907 CAH90959 CAJ83008 CDQ78875
GB	AAG12172 AAG23285 AAG23286 AAH05721 AAH18342
REF	NP_001008672 NP_001025904 NP_001029279 NP_001080280 NP_001125551
SP	Q498T3 Q5RBA1 Q5ZK36 Q66KD5 Q7ZX31
TPG	DAA30453
AlphaFold	Q498T3 Q5RBA1 Q5ZK36 Q66KD5 Q7ZX31

BMRB Entry 11353

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	TYR	CYS	ILE
2	CYS	ASN	GLN	VAL	SER	TYR	GLY	GLU	MET	VAL
3	GLY	CYS	ASP	ASN	GLN	ASP	CYS	PRO	ILE	GLU
4	TRP	PHE	HIS	TYR	GLY	CYS	VAL	GLY	LEU	THR
5	GLU	ALA	PRO	LYS	GLY	LYS	TRP	TYR	CYS	PRO
6	GLN	CYS	THR	ALA	ALA	MET	LYS	ARG	ARG	GLY
7	SER	ARG	HIS	LYS	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	TYR	CYS	ILE
2	CYS	ASN	GLN	VAL	SER	TYR	GLY	GLU	MET	VAL
3	GLY	CYS	ASP	ASN	GLN	ASP	CYS	PRO	ILE	GLU
4	TRP	PHE	HIS	TYR	GLY	CYS	VAL	GLY	LEU	THR
5	GLU	ALA	PRO	LYS	GLY	LYS	TRP	TYR	CYS	PRO
6	GLN	CYS	THR	ALA	ALA	MET	LYS	ARG	ARG	GLY
7	SER	ARG	HIS	LYS	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	TYR	CYS	ILE
2	CYS	ASN	GLN	VAL	SER	TYR	GLY	GLU	MET	VAL
3	GLY	CYS	ASP	ASN	GLN	ASP	CYS	PRO	ILE	GLU
4	TRP	PHE	HIS	TYR	GLY	CYS	VAL	GLY	LEU	THR
5	GLU	ALA	PRO	LYS	GLY	LYS	TRP	TYR	CYS	PRO
6	GLN	CYS	THR	ALA	ALA	MET	LYS	ARG	ARG	GLY
7	SER	ARG	HIS	LYS	SER	GLY	PRO	SER	SER	GLY