BMRB Entry 11334

Name: Solution structure of the TFIIS domain II of human PHD finger protein 3
Published: 2011-08-19

Click here to enlarge.

PDB ID: 2dme
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11334
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the TFIIS domain II of human PHD finger protein 3

Deposition date:

2010-08-10

Original release date:

2011-08-19

Authors:

Yoneyama, M.; Tochio, N.; Koshiba, S.; Watabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Koshiba, S.; Watabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Solution structure of the TFIIS domain II of human PHD finger protein 3" .

Assembly members:

Assembly members:
TFSII_M domain, polymer, 120 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P051216-05

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TFSII_M domain: GSSGSSGSADQIRQSVRHSL KDILMKRLTDSNLKVPEEKA AKVATKIEKELFSFFRDTDA KYKNKYRSLMFNLKDPKNNI LFKKVLKGEVTPDHLIRMSP EELASKELAAWRRRSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	520
15N chemical shifts	111
1H chemical shifts	823

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TFSII_M domain	1

Entities:

Entity 1, TFSII_M domain 120 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	ALA	ASP
2	GLN	ILE	ARG	GLN	SER	VAL	ARG	HIS	SER	LEU
3	LYS	ASP	ILE	LEU	MET	LYS	ARG	LEU	THR	ASP
4	SER	ASN	LEU	LYS	VAL	PRO	GLU	GLU	LYS	ALA
5	ALA	LYS	VAL	ALA	THR	LYS	ILE	GLU	LYS	GLU
6	LEU	PHE	SER	PHE	PHE	ARG	ASP	THR	ASP	ALA
7	LYS	TYR	LYS	ASN	LYS	TYR	ARG	SER	LEU	MET
8	PHE	ASN	LEU	LYS	ASP	PRO	LYS	ASN	ASN	ILE
9	LEU	PHE	LYS	LYS	VAL	LEU	LYS	GLY	GLU	VAL
10	THR	PRO	ASP	HIS	LEU	ILE	ARG	MET	SER	PRO
11	GLU	GLU	LEU	ALA	SER	LYS	GLU	LEU	ALA	ALA
12	TRP	ARG	ARG	ARG	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

PDB	2DME
DBJ	BAC65512
GB	AAI37914 EDL14421 EDL99332 EHB14770 ELK35434
REF	NP_001074549 NP_001102261 NP_001179500 XP_004011630 XP_004011631
TPG	DAA26423

BMRB Entry 11334

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	ALA	ASP
2	GLN	ILE	ARG	GLN	SER	VAL	ARG	HIS	SER	LEU
3	LYS	ASP	ILE	LEU	MET	LYS	ARG	LEU	THR	ASP
4	SER	ASN	LEU	LYS	VAL	PRO	GLU	GLU	LYS	ALA
5	ALA	LYS	VAL	ALA	THR	LYS	ILE	GLU	LYS	GLU
6	LEU	PHE	SER	PHE	PHE	ARG	ASP	THR	ASP	ALA
7	LYS	TYR	LYS	ASN	LYS	TYR	ARG	SER	LEU	MET
8	PHE	ASN	LEU	LYS	ASP	PRO	LYS	ASN	ASN	ILE
9	LEU	PHE	LYS	LYS	VAL	LEU	LYS	GLY	GLU	VAL
10	THR	PRO	ASP	HIS	LEU	ILE	ARG	MET	SER	PRO
11	GLU	GLU	LEU	ALA	SER	LYS	GLU	LEU	ALA	ALA
12	TRP	ARG	ARG	ARG	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	ALA	ASP
2	GLN	ILE	ARG	GLN	SER	VAL	ARG	HIS	SER	LEU
3	LYS	ASP	ILE	LEU	MET	LYS	ARG	LEU	THR	ASP
4	SER	ASN	LEU	LYS	VAL	PRO	GLU	GLU	LYS	ALA
5	ALA	LYS	VAL	ALA	THR	LYS	ILE	GLU	LYS	GLU
6	LEU	PHE	SER	PHE	PHE	ARG	ASP	THR	ASP	ALA
7	LYS	TYR	LYS	ASN	LYS	TYR	ARG	SER	LEU	MET
8	PHE	ASN	LEU	LYS	ASP	PRO	LYS	ASN	ASN	ILE
9	LEU	PHE	LYS	LYS	VAL	LEU	LYS	GLY	GLU	VAL
10	THR	PRO	ASP	HIS	LEU	ILE	ARG	MET	SER	PRO
11	GLU	GLU	LEU	ALA	SER	LYS	GLU	LEU	ALA	ALA
12	TRP	ARG	ARG	ARG	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	ALA	ASP
2	GLN	ILE	ARG	GLN	SER	VAL	ARG	HIS	SER	LEU
3	LYS	ASP	ILE	LEU	MET	LYS	ARG	LEU	THR	ASP
4	SER	ASN	LEU	LYS	VAL	PRO	GLU	GLU	LYS	ALA
5	ALA	LYS	VAL	ALA	THR	LYS	ILE	GLU	LYS	GLU
6	LEU	PHE	SER	PHE	PHE	ARG	ASP	THR	ASP	ALA
7	LYS	TYR	LYS	ASN	LYS	TYR	ARG	SER	LEU	MET
8	PHE	ASN	LEU	LYS	ASP	PRO	LYS	ASN	ASN	ILE
9	LEU	PHE	LYS	LYS	VAL	LEU	LYS	GLY	GLU	VAL
10	THR	PRO	ASP	HIS	LEU	ILE	ARG	MET	SER	PRO
11	GLU	GLU	LEU	ALA	SER	LYS	GLU	LEU	ALA	ALA
12	TRP	ARG	ARG	ARG	SER	GLY	PRO	SER	SER	GLY