BMRB Entry 11289

Name: Solution structure of the LIM domain of human Leupaxin
Published: 2011-08-18

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PDB ID: 1x3h
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11289
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the LIM domain of human Leupaxin

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the LIM domain of human Leupaxin" .

Assembly members:

Assembly members:
LIM domain, polymer, 80 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040809-04

Entity Sequences (FASTA):

Entity Sequences (FASTA):
LIM domain: GSSGSSGKDFLAMFSPKCGG CNRPVLENYLSAMDTVWHPE CFVCGDCFTSFSTGSFFELD GRPFCELHYHHRRGSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	322
15N chemical shifts	72
1H chemical shifts	463

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	LIM domain	1
2	ZINC ION no.1	2
3	ZINC ION no.2	2

Entities:

Entity 1, LIM domain 80 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ASP	PHE
2	LEU	ALA	MET	PHE	SER	PRO	LYS	CYS	GLY	GLY
3	CYS	ASN	ARG	PRO	VAL	LEU	GLU	ASN	TYR	LEU
4	SER	ALA	MET	ASP	THR	VAL	TRP	HIS	PRO	GLU
5	CYS	PHE	VAL	CYS	GLY	ASP	CYS	PHE	THR	SER
6	PHE	SER	THR	GLY	SER	PHE	PHE	GLU	LEU	ASP
7	GLY	ARG	PRO	PHE	CYS	GLU	LEU	HIS	TYR	HIS
8	HIS	ARG	ARG	GLY	SER	GLY	PRO	SER	SER	GLY

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1

ZN

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

BMRB Entry 11289

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ASP	PHE
2	LEU	ALA	MET	PHE	SER	PRO	LYS	CYS	GLY	GLY
3	CYS	ASN	ARG	PRO	VAL	LEU	GLU	ASN	TYR	LEU
4	SER	ALA	MET	ASP	THR	VAL	TRP	HIS	PRO	GLU
5	CYS	PHE	VAL	CYS	GLY	ASP	CYS	PHE	THR	SER
6	PHE	SER	THR	GLY	SER	PHE	PHE	GLU	LEU	ASP
7	GLY	ARG	PRO	PHE	CYS	GLU	LEU	HIS	TYR	HIS
8	HIS	ARG	ARG	GLY	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ASP	PHE
2	LEU	ALA	MET	PHE	SER	PRO	LYS	CYS	GLY	GLY
3	CYS	ASN	ARG	PRO	VAL	LEU	GLU	ASN	TYR	LEU
4	SER	ALA	MET	ASP	THR	VAL	TRP	HIS	PRO	GLU
5	CYS	PHE	VAL	CYS	GLY	ASP	CYS	PHE	THR	SER
6	PHE	SER	THR	GLY	SER	PHE	PHE	GLU	LEU	ASP
7	GLY	ARG	PRO	PHE	CYS	GLU	LEU	HIS	TYR	HIS
8	HIS	ARG	ARG	GLY	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ASP	PHE
2	LEU	ALA	MET	PHE	SER	PRO	LYS	CYS	GLY	GLY
3	CYS	ASN	ARG	PRO	VAL	LEU	GLU	ASN	TYR	LEU
4	SER	ALA	MET	ASP	THR	VAL	TRP	HIS	PRO	GLU
5	CYS	PHE	VAL	CYS	GLY	ASP	CYS	PHE	THR	SER
6	PHE	SER	THR	GLY	SER	PHE	PHE	GLU	LEU	ASP
7	GLY	ARG	PRO	PHE	CYS	GLU	LEU	HIS	TYR	HIS
8	HIS	ARG	ARG	GLY	SER	GLY	PRO	SER	SER	GLY