BMRB Entry 11222

Name: Solution structure of the first SH3 domain of human KIAA0769 protein
Published: 2011-07-21

Click here to enlarge.

PDB ID: 2dl5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11222
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the first SH3 domain of human KIAA0769 protein

Deposition date:

2010-07-22

Original release date:

2011-07-21

Authors:

Qin, X.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first SH3 domain of human KIAA0769 protein" .

Assembly members:

Assembly members:
SH3 domain, polymer, 78 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050725-11

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGTLRNYPLTCKVVY SYKASQPDELTIEEHEVLEV IEDGDMEDWVKARNKVGQVG YVPEKYLQFPTSSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	328
15N chemical shifts	74
1H chemical shifts	508

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	first SH3 domain of human KIAA0769 protein	1

Entities:

Entity 1, first SH3 domain of human KIAA0769 protein 78 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

LEU

ARG

2

ASN

TYR

PRO

LEU

THR

CYS

LYS

VAL

TYR

3

SER

TYR

LYS

ALA

SER

GLN

PRO

ASP

GLU

LEU

4

THR

ILE

GLU

HIS

GLU

VAL

LEU

GLU

VAL

5

ILE

GLU

ASP

GLY

ASP

MET

GLU

ASP

TRP

VAL

6

LYS

ALA

ARG

ASN

LYS

VAL

GLY

GLN

VAL

GLY

7

TYR

VAL

PRO

GLU

LYS

TYR

LEU

GLN

PHE

PRO

8

THR

SER

GLY

PRO

SER

GLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.18 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

Delta v4.3, JEOL - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9296, Kobayashi N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

JEOL ECA 800 MHz

PDB	2DL5
REF	XP_008148265 XP_009966856