BMRB Entry 11213

Name: Solution structure of the SH3 domain of Hypothetical protein SH3YL1
Published: 2011-07-21

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PDB ID: 2d8h
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11213
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the SH3 domain of Hypothetical protein SH3YL1

Deposition date:

2010-07-22

Original release date:

2011-07-21

Authors:

Qin, X.; Nagasima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Nagasima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the SH3 domain of Hypothetical protein SH3YL1" .

Assembly members:

Assembly members:
SH3 domain, polymer, 80 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050425-18

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGHERVGNLNQPIEV TALYSFEGQQPGDLNFQAGD RITVISKTDSHFDWWEGKLR GQTGIFPANYVTMNSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	325
15N chemical shifts	80
1H chemical shifts	500

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 domain of Hypothetical protein SH3YL1	1

Entities:

Entity 1, SH3 domain of Hypothetical protein SH3YL1 80 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	HIS	GLU	ARG
2	VAL	GLY	ASN	LEU	ASN	GLN	PRO	ILE	GLU	VAL
3	THR	ALA	LEU	TYR	SER	PHE	GLU	GLY	GLN	GLN
4	PRO	GLY	ASP	LEU	ASN	PHE	GLN	ALA	GLY	ASP
5	ARG	ILE	THR	VAL	ILE	SER	LYS	THR	ASP	SER
6	HIS	PHE	ASP	TRP	TRP	GLU	GLY	LYS	LEU	ARG
7	GLY	GLN	THR	GLY	ILE	PHE	PRO	ALA	ASN	TYR
8	VAL	THR	MET	ASN	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

PDB	2D8H
DBJ	BAB15493 BAF85001 BAJ17777 BAK63510
EMBL	CAB43679 CAG33642 CAH90143 CAH91158
GB	AAH08374 AAH08375 AAY14957 ACE86416 ACE86417
REF	NP_001125036 NP_001153069 NP_001238793 NP_001269611 NP_001269616
SP	Q5RAQ2 Q96HL8
AlphaFold	Q5RAQ2 Q96HL8

BMRB Entry 11213

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	HIS	GLU	ARG
2	VAL	GLY	ASN	LEU	ASN	GLN	PRO	ILE	GLU	VAL
3	THR	ALA	LEU	TYR	SER	PHE	GLU	GLY	GLN	GLN
4	PRO	GLY	ASP	LEU	ASN	PHE	GLN	ALA	GLY	ASP
5	ARG	ILE	THR	VAL	ILE	SER	LYS	THR	ASP	SER
6	HIS	PHE	ASP	TRP	TRP	GLU	GLY	LYS	LEU	ARG
7	GLY	GLN	THR	GLY	ILE	PHE	PRO	ALA	ASN	TYR
8	VAL	THR	MET	ASN	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	HIS	GLU	ARG
2	VAL	GLY	ASN	LEU	ASN	GLN	PRO	ILE	GLU	VAL
3	THR	ALA	LEU	TYR	SER	PHE	GLU	GLY	GLN	GLN
4	PRO	GLY	ASP	LEU	ASN	PHE	GLN	ALA	GLY	ASP
5	ARG	ILE	THR	VAL	ILE	SER	LYS	THR	ASP	SER
6	HIS	PHE	ASP	TRP	TRP	GLU	GLY	LYS	LEU	ARG
7	GLY	GLN	THR	GLY	ILE	PHE	PRO	ALA	ASN	TYR
8	VAL	THR	MET	ASN	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	HIS	GLU	ARG
2	VAL	GLY	ASN	LEU	ASN	GLN	PRO	ILE	GLU	VAL
3	THR	ALA	LEU	TYR	SER	PHE	GLU	GLY	GLN	GLN
4	PRO	GLY	ASP	LEU	ASN	PHE	GLN	ALA	GLY	ASP
5	ARG	ILE	THR	VAL	ILE	SER	LYS	THR	ASP	SER
6	HIS	PHE	ASP	TRP	TRP	GLU	GLY	LYS	LEU	ARG
7	GLY	GLN	THR	GLY	ILE	PHE	PRO	ALA	ASN	TYR
8	VAL	THR	MET	ASN	SER	GLY	PRO	SER	SER	GLY