BMRB Entry 11178

Click here to enlarge.

PDB ID: 1ugv
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11178
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the SH3 domain of human olygophrein-1 like protein (KIAA0621)

Deposition date:

2010-07-21

Original release date:

2011-07-20

Authors:

Inoue, K.; Hayashi, F.; Shirouzu, M.; Terada, T.; Kigawa, T.; Inoue, M.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Ohara, O.; Nagase, T.; Kikuno, R.; Nakayama, M.; Yokoyama, S.

Citation:

Citation: Inoue, K.; Hayashi, F.; Shirouzu, M.; Terada, T.; Kigawa, T.; Inoue, M.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Ohara, O.; Nagase, T.; Kikuno, R.; Nakayama, M.; Yokoyama, S.. "Solution structure of the SH3 domain of human olygophrein-1 like protein (KIAA0621)" .

Assembly members:

Assembly members:
SH3 domain, polymer, 72 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P021021-18

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGTPFRKAKALYACK AEHDSELSFTAGTVFDNVHP SQEPGWLEGTLNGKTGLIPE NYVEFLSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	280
15N chemical shifts	62
1H chemical shifts	432

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 domain	1

Entities:

Entity 1, SH3 domain 72 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

PRO

PHE

2

ARG

LYS

ALA

LYS

ALA

LEU

TYR

ALA

CYS

LYS

3

ALA

GLU

HIS

ASP

SER

GLU

LEU

SER

PHE

THR

4

ALA

GLY

THR

VAL

PHE

ASP

ASN

VAL

HIS

PRO

5

SER

GLN

GLU

PRO

GLY

TRP

LEU

GLU

GLY

THR

6

LEU

ASN

GLY

LYS

THR

GLY

LEU

ILE

PRO

GLU

7

ASN

TYR

VAL

GLU

PHE

LEU

SER

GLY

PRO

SER

8

SER

GLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.2 mM; Tris 20 mM; NaCl 100 mM; d10-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.816, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - structure solution

NMR spectrometers:

Varian INOVA 800 MHz

PDB	1UGV
DBJ	BAA31596 BAG60864
EMBL	CAA71414
GB	AAD39482 AAH68555 AIC56005 EAW61876 EAW61877
REF	NP_001129080 NP_001192451 NP_055886 XP_001096464 XP_001154393
SP	Q9UNA1
TPG	DAA27326
AlphaFold	Q9UNA1