BMRB Entry 11113

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PDB ID: 1x5e
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11113
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the thioredoxin-like domain of human Thioredoxin-related transmembrane protein

Deposition date:

2010-02-18

Original release date:

2011-02-18

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the thioredoxin-like domain of human Thioredoxin-related transmembrane protein" .

Assembly members:

Assembly members:
thioredoxin like domain, polymer, 126 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P041108-16

Entity Sequences (FASTA):

Entity Sequences (FASTA):
thioredoxin like domain: GSSGSSGNVRVITDENWREL LEGDWMIEFYAPWCPACQNL QPEWESFAEWGEDLEVNIAK VDVTEQPGLSGRFIINALPT IYHCKDGEFRRYQGPRTKKD FINFISDKEWKSIEPVSSWF SGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	564
15N chemical shifts	131
1H chemical shifts	846

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	thioredoxin like domain	1

Entities:

Entity 1, thioredoxin like domain 126 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASN

VAL

ARG

2

VAL

ILE

THR

ASP

GLU

ASN

TRP

ARG

GLU

LEU

3

LEU

GLU

GLY

ASP

TRP

MET

ILE

GLU

PHE

TYR

4

ALA

PRO

TRP

CYS

PRO

ALA

CYS

GLN

ASN

LEU

5

GLN

PRO

GLU

TRP

GLU

SER

PHE

ALA

GLU

TRP

6

GLY

GLU

ASP

LEU

GLU

VAL

ASN

ILE

ALA

LYS

7

VAL

ASP

VAL

THR

GLU

GLN

PRO

GLY

LEU

SER

8

GLY

ARG

PHE

ILE

ASN

ALA

LEU

PRO

THR

9

ILE

TYR

HIS

CYS

LYS

ASP

GLY

GLU

PHE

ARG

10

ARG

TYR

GLN

GLY

PRO

ARG

THR

LYS

ASP

11

PHE

ILE

ASN

PHE

ILE

SER

ASP

LYS

GLU

TRP

12

LYS

SER

ILE

GLU

PRO

VAL

SER

TRP

PHE

13

SER

GLY

PRO

SER

GLY

Samples:

sample_1: thioredoxin like domain, [U-13C; U-15N], 1.3 mM; d-Tris HCl, [U-2H], 20 mM; NaCl 100 mM; d-DTT, [U-2H], 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-SEPARATED NOESY	sample_1	isotropic	condition_1
3D 13C-SEPARATED NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.926, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz