BMRB Entry 11104

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PDB ID: 2dj2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11104
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the second thioredoxin domain of mouse Protein disulfide-isomerase A4

Deposition date:

2010-02-18

Original release date:

2011-02-18

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the second thioredoxin domain of mouse Protein disulfide-isomerase A4" .

Assembly members:

Assembly members:
2nd thioredoxin domain, polymer, 120 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050425-14

Entity Sequences (FASTA):

Entity Sequences (FASTA):
2nd thioredoxin domain: GSSGSSGVTLSLTKDNFDDV VNNADIILVEFYAPWCGHCK KLAPEYEKAAKELSKRSPPI PLAKVDATEQTDLAKRFDVS GYPTLKIFRKGRPFDYNGPR EKYGIVDYMIEQSGSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	518
15N chemical shifts	112
1H chemical shifts	791

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	2nd thioredoxin domain	1

Entities:

Entity 1, 2nd thioredoxin domain 120 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	VAL	THR	LEU
2	SER	LEU	THR	LYS	ASP	ASN	PHE	ASP	ASP	VAL
3	VAL	ASN	ASN	ALA	ASP	ILE	ILE	LEU	VAL	GLU
4	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
5	LYS	LEU	ALA	PRO	GLU	TYR	GLU	LYS	ALA	ALA
6	LYS	GLU	LEU	SER	LYS	ARG	SER	PRO	PRO	ILE
7	PRO	LEU	ALA	LYS	VAL	ASP	ALA	THR	GLU	GLN
8	THR	ASP	LEU	ALA	LYS	ARG	PHE	ASP	VAL	SER
9	GLY	TYR	PRO	THR	LEU	LYS	ILE	PHE	ARG	LYS
10	GLY	ARG	PRO	PHE	ASP	TYR	ASN	GLY	PRO	ARG
11	GLU	LYS	TYR	GLY	ILE	VAL	ASP	TYR	MET	ILE
12	GLU	GLN	SER	GLY	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-SEPARATED NOESY	sample_1	isotropic	condition_1
3D 13C-SEPARATED NOESY	sample_1	isotropic	condition_1

BMRB Entry 11104

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	VAL	THR	LEU
2	SER	LEU	THR	LYS	ASP	ASN	PHE	ASP	ASP	VAL
3	VAL	ASN	ASN	ALA	ASP	ILE	ILE	LEU	VAL	GLU
4	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
5	LYS	LEU	ALA	PRO	GLU	TYR	GLU	LYS	ALA	ALA
6	LYS	GLU	LEU	SER	LYS	ARG	SER	PRO	PRO	ILE
7	PRO	LEU	ALA	LYS	VAL	ASP	ALA	THR	GLU	GLN
8	THR	ASP	LEU	ALA	LYS	ARG	PHE	ASP	VAL	SER
9	GLY	TYR	PRO	THR	LEU	LYS	ILE	PHE	ARG	LYS
10	GLY	ARG	PRO	PHE	ASP	TYR	ASN	GLY	PRO	ARG
11	GLU	LYS	TYR	GLY	ILE	VAL	ASP	TYR	MET	ILE
12	GLU	GLN	SER	GLY	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	VAL	THR	LEU
2	SER	LEU	THR	LYS	ASP	ASN	PHE	ASP	ASP	VAL
3	VAL	ASN	ASN	ALA	ASP	ILE	ILE	LEU	VAL	GLU
4	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
5	LYS	LEU	ALA	PRO	GLU	TYR	GLU	LYS	ALA	ALA
6	LYS	GLU	LEU	SER	LYS	ARG	SER	PRO	PRO	ILE
7	PRO	LEU	ALA	LYS	VAL	ASP	ALA	THR	GLU	GLN
8	THR	ASP	LEU	ALA	LYS	ARG	PHE	ASP	VAL	SER
9	GLY	TYR	PRO	THR	LEU	LYS	ILE	PHE	ARG	LYS
10	GLY	ARG	PRO	PHE	ASP	TYR	ASN	GLY	PRO	ARG
11	GLU	LYS	TYR	GLY	ILE	VAL	ASP	TYR	MET	ILE
12	GLU	GLN	SER	GLY	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	VAL	THR	LEU
2	SER	LEU	THR	LYS	ASP	ASN	PHE	ASP	ASP	VAL
3	VAL	ASN	ASN	ALA	ASP	ILE	ILE	LEU	VAL	GLU
4	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
5	LYS	LEU	ALA	PRO	GLU	TYR	GLU	LYS	ALA	ALA
6	LYS	GLU	LEU	SER	LYS	ARG	SER	PRO	PRO	ILE
7	PRO	LEU	ALA	LYS	VAL	ASP	ALA	THR	GLU	GLN
8	THR	ASP	LEU	ALA	LYS	ARG	PHE	ASP	VAL	SER
9	GLY	TYR	PRO	THR	LEU	LYS	ILE	PHE	ARG	LYS
10	GLY	ARG	PRO	PHE	ASP	TYR	ASN	GLY	PRO	ARG
11	GLU	LYS	TYR	GLY	ILE	VAL	ASP	TYR	MET	ILE
12	GLU	GLN	SER	GLY	SER	GLY	PRO	SER	SER	GLY