BMRB Entry 10287

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PDB ID: 2da5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10287
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the second homeobox domain of Zinc fingers and homeoboxes protein 3 (Triple homeobox 1 protein)

Deposition date:

2008-12-17

Original release date:

2009-12-17

Authors:

Ohnishi, S.; Kigawa, T.; Saito, K.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Ohnishi, S.; Kigawa, T.; Saito, K.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the second homeobox domain of Zinc fingers and homeoboxes protein 3 (Triple homeobox 1 protein)" .

Assembly members:

Assembly members:
The second homeobox domain, polymer, 75 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050404-23

Entity Sequences (FASTA):

Entity Sequences (FASTA):
The second homeobox domain: GSSGSSGPTKYKERAPEQLR ALESSFAQNPLPLDEELDRL RSETKMTRREIDSWFSERRK KVNAEETKKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	302
15N chemical shifts	69
1H chemical shifts	470

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	The second homeobox domain	1

Entities:

Entity 1, The second homeobox domain 75 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

THR

LYS

2

TYR

LYS

GLU

ARG

ALA

PRO

GLU

GLN

LEU

ARG

3

ALA

LEU

GLU

SER

PHE

ALA

GLN

ASN

PRO

4

LEU

PRO

LEU

ASP

GLU

LEU

ASP

ARG

LEU

5

ARG

SER

GLU

THR

LYS

MET

THR

ARG

GLU

6

ILE

ASP

SER

TRP

PHE

SER

GLU

ARG

LYS

7

LYS

VAL

ASN

ALA

GLU

THR

LYS

SER

8

GLY

PRO

SER

GLY

Samples:

sample_1: The second homeobox domain, [U-13C; U-15N], 1.2 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert. P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz