BMRB Entry 10284

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10284
MolProbity Validation Chart

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Title:
Solution structure of the second homeobox domain of AT-binding transcription factor 1 (ATBF1)
Deposition date:
2008-12-17
Original release date:
2009-12-17
Authors:
Ohnishi, S.; Kigawa, T.; Tochio, N.; Koshiba, S.; Inoue, M.; Yokoyama, S.
Citation:

Citation: Ohnishi, S.; Kigawa, T.; Tochio, N.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the second homeobox domain of AT-binding transcription factor 1 (ATBF1)"  .

Assembly members:

Assembly members:
The second homeobox domain, polymer, 70 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P050620-20

Entity Sequences (FASTA):

Entity Sequences (FASTA):
The second homeobox domain: GSSGSSGRSSRTRFTDYQLR VLQDFFDANAYPKDDEFEQL SNLLNLPTRVIVVWFQNARQ KARKSGPSSG

Data sets:
Data typeCount
13C chemical shifts285
15N chemical shifts67
1H chemical shifts439

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1The second homeobox domain1

Entities:

Entity 1, The second homeobox domain 70 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYARGSERSER
2   ARGTHRARGPHETHRASPTYRGLNLEUARG
3   VALLEUGLNASPPHEPHEASPALAASNALA
4   TYRPROLYSASPASPGLUPHEGLUGLNLEU
5   SERASNLEULEUASNLEUPROTHRARGVAL
6   ILEVALVALTRPPHEGLNASNALAARGGLN
7   LYSALAARGLYSSERGLYPROSERSERGLY

Samples:

sample_1: The second homeobox domain, [U-13C; U-15N], 1.1 mM; d-TrisHCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 900 MHz

Related Database Links:

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