BMRB Entry 10137

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PDB ID: 2e4j
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10137
MolProbity Validation Chart

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Title:
Lipocalin-type Prostaglandin D synthase
Deposition date:
2007-05-16
Original release date:
2008-02-20
Authors:
Shimamoto, Shigeru
Citation:

Citation: Shimamoto, Shigeru; Yoshida, T.; Inui, T.; Gohda, K.; Kobayashi, Y.; Fujimori, K.; Tsurumura, T.; Aritake, K.; Urade, Y.; Ohkubo, T.. "NMR solution structure of lipocalin-type prostaglandin D synthase: evidence for partial overlapping of catalytic pocket and retinoic acid-binding pocket within the central cavity."  J. Biol. Chem. 282, 31373-31379 (2007).
PubMed: 17715133

Assembly members:

Assembly members:
L-PGDS, polymer, 167 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:

Experimental source:   Production method: recombinant technology   Vector: pGEX-2T

Entity Sequences (FASTA):

Entity Sequences (FASTA):
L-PGDS: GSQGHDTVQPNFQQDKFLGR WYSAGLASNSSWFREKKAVL YMCKTVVAPSTEGGLNLTST FLRKNQCETKIMVLQPAGAP GHYTYSSPHSGSIHSVSVVE ANYDEYALLFSRGTKGPGQD FRMATLYSRTQTLKDELKEK FTTFSKAQGLTEEDIVFLPQ PDKCIQE

Data sets:
Data typeCount
13C chemical shifts351
15N chemical shifts107
1H chemical shifts674

Additional metadata:

  • Assembly
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Lipocalin-type Prostaglandin D synthase1

Entities:

Entity 1, Lipocalin-type Prostaglandin D synthase 167 residues - Formula weight is not available

1   GLYSERGLNGLYHISASPTHRVALGLNPRO
2   ASNPHEGLNGLNASPLYSPHELEUGLYARG
3   TRPTYRSERALAGLYLEUALASERASNSER
4   SERTRPPHEARGGLULYSLYSALAVALLEU
5   TYRMETCYSLYSTHRVALVALALAPROSER
6   THRGLUGLYGLYLEUASNLEUTHRSERTHR
7   PHELEUARGLYSASNGLNCYSGLUTHRLYS
8   ILEMETVALLEUGLNPROALAGLYALAPRO
9   GLYHISTYRTHRTYRSERSERPROHISSER
10   GLYSERILEHISSERVALSERVALVALGLU
11   ALAASNTYRASPGLUTYRALALEULEUPHE
12   SERARGGLYTHRLYSGLYPROGLYGLNASP
13   PHEARGMETALATHRLEUTYRSERARGTHR
14   GLNTHRLEULYSASPGLULEULYSGLULYS
15   PHETHRTHRPHESERLYSALAGLNGLYLEU
16   THRGLUGLUASPILEVALPHELEUPROGLN
17   PROASPLYSCYSILEGLNGLU

Related Database Links:

BMRB 11062 18473
PDB 2CZT 2CZU 2E4J 2KTD 2RQ0
DBJ BAA74461 BAE20833
EMBL CAA61506 CAA71226
GB AAH38083 AAH43015 EDL08248 EDL08250 EDL08251
REF NP_032989 XP_006497849 XP_006497850
SP O09114
AlphaFold O09114

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