BMRB Entry 10061

Name: Solution structure of PDZ domain of mouse Cypher protein
Published: 2008-08-13

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PDB ID: 1wjl
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10061
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of PDZ domain of mouse Cypher protein

Deposition date:

2006-11-29

Original release date:

2008-08-13

Authors:

Sato, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of PDZ domain of mouse Cypher protein" .

Assembly members:

Assembly members:
PDZ domain, polymer, 90 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P031104-22

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGMSYSVTLTGPGPW GFRLQGGKDFNMPLTISRIT PGSKAAQSQLSQGDLVVAID GVNTDTMTHLEAQNKIKSAS YNLSLTLQKS

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	371
15N chemical shifts	94
1H chemical shifts	599

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Cypher protein	1

Entities:

Entity 1, Cypher protein 90 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	TYR
2	SER	VAL	THR	LEU	THR	GLY	PRO	GLY	PRO	TRP
3	GLY	PHE	ARG	LEU	GLN	GLY	GLY	LYS	ASP	PHE
4	ASN	MET	PRO	LEU	THR	ILE	SER	ARG	ILE	THR
5	PRO	GLY	SER	LYS	ALA	ALA	GLN	SER	GLN	LEU
6	SER	GLN	GLY	ASP	LEU	VAL	VAL	ALA	ILE	ASP
7	GLY	VAL	ASN	THR	ASP	THR	MET	THR	HIS	LEU
8	GLU	ALA	GLN	ASN	LYS	ILE	LYS	SER	ALA	SER
9	TYR	ASN	LEU	SER	LEU	THR	LEU	GLN	LYS	SER

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

PDB	1RGW 1WJL
DBJ	BAA31588 BAB23128 BAD32258 BAE23262 BAE25016
EMBL	CAB46727 CAB46728 CAB46729 CAB46747
GB	AAD42950 AAD42951 AAF33847 AAF33848 AAH10929
REF	NP_001030493 NP_001034160 NP_001034161 NP_001034162 NP_001034163
SP	O75112 Q9JKS4
TPG	DAA14160
AlphaFold	O75112 Q9JKS4

BMRB Entry 10061

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	TYR
2	SER	VAL	THR	LEU	THR	GLY	PRO	GLY	PRO	TRP
3	GLY	PHE	ARG	LEU	GLN	GLY	GLY	LYS	ASP	PHE
4	ASN	MET	PRO	LEU	THR	ILE	SER	ARG	ILE	THR
5	PRO	GLY	SER	LYS	ALA	ALA	GLN	SER	GLN	LEU
6	SER	GLN	GLY	ASP	LEU	VAL	VAL	ALA	ILE	ASP
7	GLY	VAL	ASN	THR	ASP	THR	MET	THR	HIS	LEU
8	GLU	ALA	GLN	ASN	LYS	ILE	LYS	SER	ALA	SER
9	TYR	ASN	LEU	SER	LEU	THR	LEU	GLN	LYS	SER

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	TYR
2	SER	VAL	THR	LEU	THR	GLY	PRO	GLY	PRO	TRP
3	GLY	PHE	ARG	LEU	GLN	GLY	GLY	LYS	ASP	PHE
4	ASN	MET	PRO	LEU	THR	ILE	SER	ARG	ILE	THR
5	PRO	GLY	SER	LYS	ALA	ALA	GLN	SER	GLN	LEU
6	SER	GLN	GLY	ASP	LEU	VAL	VAL	ALA	ILE	ASP
7	GLY	VAL	ASN	THR	ASP	THR	MET	THR	HIS	LEU
8	GLU	ALA	GLN	ASN	LYS	ILE	LYS	SER	ALA	SER
9	TYR	ASN	LEU	SER	LEU	THR	LEU	GLN	LYS	SER

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	TYR
2	SER	VAL	THR	LEU	THR	GLY	PRO	GLY	PRO	TRP
3	GLY	PHE	ARG	LEU	GLN	GLY	GLY	LYS	ASP	PHE
4	ASN	MET	PRO	LEU	THR	ILE	SER	ARG	ILE	THR
5	PRO	GLY	SER	LYS	ALA	ALA	GLN	SER	GLN	LEU
6	SER	GLN	GLY	ASP	LEU	VAL	VAL	ALA	ILE	ASP
7	GLY	VAL	ASN	THR	ASP	THR	MET	THR	HIS	LEU
8	GLU	ALA	GLN	ASN	LYS	ILE	LYS	SER	ALA	SER
9	TYR	ASN	LEU	SER	LEU	THR	LEU	GLN	LYS	SER