BMRB Entry 10011

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PDB ID: 2com
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10011
MolProbity Validation Chart

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Title:
SOLUTION STRUCTURE OF THE SWIRM DOMAIN OF HUMAN LSD1
Deposition date:
2005-11-07
Original release date:
2006-11-14
Authors:
Tochio, N.; Umehara, T.; Koshiba, S.; Inoue, M.; TANAKA, A.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Tochio, N.; Umehara, T.; Koshiba, S.; Inoue, M.; Yabuki, T.; Aoki, M.; Seki, E.; Watanabe, S.; Tomo, Y.; Hanada, M.; Ikari, M.; Sato, M.; Terada, T.; Nagase, T.; Ohara, O.; Shirouzu, M.; Tanaka, A.; Kigawa, T.; Yokoyama, S.. "Solution structure of the SWIRM domain of human histone demethylase LSD1"  Structure 14, 457-468 (2006).
PubMed: 16531230

Assembly members:

Assembly members:
SWIRM domain, polymer, 124 residues, 13710.63 Da.

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P040401-21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SWIRM domain: GSSGSSGEEPSGVEGAAFQS RLPHDRMTSQEAACFPDIIS GPQQTQKVFLFIRNRTLQLW LDNPKIQLTFEATLQQLEAP YNSDTVLVHRVHSYLERHGL INFGIYKRIKPLPTKKTGSG PSSG

Data sets:
Data typeCount
13C chemical shifts525
15N chemical shifts119
1H chemical shifts828

Additional metadata:

  • Assembly
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Assembly:

Entity Assembly IDEntity NameEntity ID
1SWIRM domain1

Entities:

Entity 1, SWIRM domain 124 residues - 13710.63 Da.

1   GLYSERSERGLYSERSERGLYGLUGLUPRO
2   SERGLYVALGLUGLYALAALAPHEGLNSER
3   ARGLEUPROHISASPARGMETTHRSERGLN
4   GLUALAALACYSPHEPROASPILEILESER
5   GLYPROGLNGLNTHRGLNLYSVALPHELEU
6   PHEILEARGASNARGTHRLEUGLNLEUTRP
7   LEUASPASNPROLYSILEGLNLEUTHRPHE
8   GLUALATHRLEUGLNGLNLEUGLUALAPRO
9   TYRASNSERASPTHRVALLEUVALHISARG
10   VALHISSERTYRLEUGLUARGHISGLYLEU
11   ILEASNPHEGLYILETYRLYSARGILELYS
12   PROLEUPROTHRLYSLYSTHRGLYSERGLY
13   PROSERSERGLY

Related Database Links:

BMRB 17171
PDB 2COM 2DW4 2EJR 2H94 2HKO 2IW5 2L3D 2UXN 2UXX 2V1D 2X0L 2XAF 2XAG 2XAH 2XAJ 2XAQ 2XAS 2Y48 2Z3Y 2Z5U 3ABT 3ABU 4BAY 4KUM 4UXN
DBJ BAA25527 BAC97980 BAF83017 BAG09773
EMBL CAH90077
GB AAH16639 AAH48134 AAI51757 ABX10191 AIC62107
REF NP_055828 NP_598633 XP_002685763 XP_003271633 XP_003415419
SP O60341 Q6ZQ88
TPG DAA32188
AlphaFold O60341 Q6ZQ88

Download HSQC peak lists in one of the following formats:
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SPARKY: Backbone or all simulated peaks