BMRB Entry 18546

Name: Solution structure of the tandem zinc finger domain of fission yeast Stc1
Published: 2013-05-06

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PDB ID: 2luy
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18546
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the tandem zinc finger domain of fission yeast Stc1

Deposition date:

2012-06-22

Original release date:

2013-05-06

Authors:

He, Chao; Shi, Yun; Bayne, Elizabeth; Wu, Hui

Citation:

Citation: He, Chao; Pillai, Sreerekha; Taglini, Francesca; Li, Fudong; Ruan, Ke; Zhang, Jiahai; Wu, Jihui; Shi, Yunyu; Bayne, Elizabeth. "Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification." Proc. Natl. Acad. Sci. U.S.A. 110, E1879-E1888 (2013).
PubMed: 23613586

Assembly members:

Assembly members:
entity_1, polymer, 97 residues, 11085.919 Da.
entity_ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: fission yeast Taxonomy ID: 4896 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Schizosaccharomyces pombe

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: HMGKNDNDALIMCMRCRKVK GIDSYSKTQWSKTFTFVRGR TVSVSDPKVICRTCQPKQHD SIWCTACQQTKGINEFSKAQ RHVLDPRCQICVHSQRN

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	385
15N chemical shifts	105
1H chemical shifts	649

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	tandem zinc finger domain of Stc1	1
2	ZINC ION_1	2
3	ZINC ION_2	2

Entities:

Entity 1, tandem zinc finger domain of Stc1 97 residues - 11085.919 Da.

1

HIS

MET

GLY

LYS

ASN

ASP

ASN

ASP

ALA

LEU

2

ILE

MET

CYS

MET

ARG

CYS

ARG

LYS

VAL

LYS

3

GLY

ILE

ASP

SER

TYR

SER

LYS

THR

GLN

TRP

4

SER

LYS

THR

PHE

THR

PHE

VAL

ARG

GLY

ARG

5

THR

VAL

SER

VAL

SER

ASP

PRO

LYS

VAL

ILE

6

CYS

ARG

THR

CYS

GLN

PRO

LYS

GLN

HIS

ASP

7

SER

ILE

TRP

CYS

THR

ALA

CYS

GLN

THR

8

LYS

GLY

ILE

ASN

GLU

PHE

SER

LYS

ALA

GLN

9

ARG

HIS

VAL

LEU

ASP

PRO

ARG

CYS

GLN

ILE

10

CYS

VAL

HIS

SER

GLN

ARG

ASN

Entity 2, ZINC ION_1 - Zn - 65.409 Da.

1

ZN

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

UNP	O94276
PDB	2LUY
EMBL	CAA21813
REF	NP_596535
SP	O94276
AlphaFold	O94276 O94276

BMRB Entry 18546

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: