BMRB Entry 17270

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR17270
MolProbity Validation Chart

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Title:
Complex between BD1 of Brd3 and GATA-1 C-tail
Deposition date:
2010-10-31
Original release date:
2011-05-18
Authors:
Gamsjaeger, Roland; Webb, Sarah; Lamonica, Janine; Blobel, Gerd; Mackay, Joel
Citation:

Citation: Gamsjaeger, Roland; Webb, Sarah; Lamonica, Janine; Billin, Andrew; Blobel, Gerd; Mackay, Joel. "Structural Basis and Specificity of Acetylated Transcription Factor GATA1 Recognition by BET Family Bromodomain Protein Brd3."  Mol. Cell. Biol. 31, 2632-2640 (2011).
PubMed: 21555453

Assembly members:

Assembly members:
Brd3, polymer, 128 residues, 14967.378 Da.
GATA-1_C-tail, polymer, 13 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pGex6P

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Brd3: GPLGSEVSNPSKPGRKTNQL QYMQNVVVKTLWKHQFAWPF YQPVDAIKLNLPDYHKIIKN PMDMGTIKKRLENNYYWSAS ECMQDFNTMFTNCYIYNKPT DDIVLMAQALEKIFLQKVAQ MPQEEVEL
GATA-1_C-tail: KASGXGKXLRGSN

Data sets:
Data typeCount
13C chemical shifts589
15N chemical shifts141
1H chemical shifts885

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Brd31
2GATA-1 C-tail2

Entities:

Entity 1, Brd3 128 residues - 14967.378 Da.

1   GLYPROLEUGLYSERGLUVALSERASNPRO
2   SERLYSPROGLYARGLYSTHRASNGLNLEU
3   GLNTYRMETGLNASNVALVALVALLYSTHR
4   LEUTRPLYSHISGLNPHEALATRPPROPHE
5   TYRGLNPROVALASPALAILELYSLEUASN
6   LEUPROASPTYRHISLYSILEILELYSASN
7   PROMETASPMETGLYTHRILELYSLYSARG
8   LEUGLUASNASNTYRTYRTRPSERALASER
9   GLUCYSMETGLNASPPHEASNTHRMETPHE
10   THRASNCYSTYRILETYRASNLYSPROTHR
11   ASPASPILEVALLEUMETALAGLNALALEU
12   GLULYSILEPHELEUGLNLYSVALALAGLN
13   METPROGLNGLUGLUVALGLULEU

Entity 2, GATA-1 C-tail 13 residues - Formula weight is not available

1   LYSALASERGLYALYGLYLYSALYLEUARG
2   GLYSERASN

Samples:

sample_1: Brd3, [U-13C; U-15N], 0.5 – 1.5 mM; GATA-1_C-tail0.5 – 1.5 mM; NaCl 100 mM; Tris 20 mM; DTT 1 mM; H2O 90%; D2O 10%

sample_2: Brd3, [U-13C; U-15N], 0.5 – 1.5 mM; GATA-1_C-tail0.5 – 1.5 mM; NaCl 100 mM; Tris 20 mM; DTT 1 mM; D2O 100%

sample_conditions_1: pH: 7; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_2isotropicsample_conditions_1
3D (H)CCH-TOCSYsample_2isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
3D HCC(CO)NH TOCSYsample_1isotropicsample_conditions_1
3D CC(CO)NH TOCSYsample_1isotropicsample_conditions_1
3D 13C sep (F2) 15N13C filtered (F1) NOESYsample_1isotropicsample_conditions_1
3D 13C sep (F1) 15N13C filtered (F3) NOESYsample_1isotropicsample_conditions_1
2D 15N13C filtered NOESYsample_1isotropicsample_conditions_1
2D 15N13C filtered TOCSYsample_1isotropicsample_conditions_1
3D 13C NOESYsample_2isotropicsample_conditions_1
3D 15N NOESYsample_1isotropicsample_conditions_1

Software:

CNS v1.1, Brunger, Adams, Clore, Gros, Nilges and Read - chemical shift assignment, refinement

NMR spectrometers:

  • Bruker Avance 600 MHz
  • Bruker Avance 800 MHz

Related Database Links:

PDB
GB ETE60652
REF XP_008069962
AlphaFold Q7TMX8

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks