BMRB Entry 10291

Name: The solution structure of the homeobox domain of human homeobox protein TGIF2LX
Published: 2009-12-17

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PDB ID: 2dmn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10291
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the homeobox domain of human homeobox protein TGIF2LX

Deposition date:

2008-12-17

Original release date:

2009-12-17

Authors:

Tochio, N.; Ohnishi, S.; Sasagawa, A.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Ohnishi, S.; Sasagawa, A.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the homeobox domain of human homeobox protein TGIF2LX" .

Assembly members:

Assembly members:
homeobox domain, polymer, 83 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050530-26

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGKKRKGNLPAESVK ILRDWMYKHRFKAYPSEEEK QMLSEKTNLSLLQISNWFIN ARRRILPDMLQQRRNDPSGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	318
15N chemical shifts	68
1H chemical shifts	498

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	homeobox domain	1

Entities:

Entity 1, homeobox domain 83 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

LYS

ARG

2

LYS

GLY

ASN

LEU

PRO

ALA

GLU

SER

VAL

LYS

3

ILE

LEU

ARG

ASP

TRP

MET

TYR

LYS

HIS

ARG

4

PHE

LYS

ALA

TYR

PRO

SER

GLU

LYS

5

GLN

MET

LEU

SER

GLU

LYS

THR

ASN

LEU

SER

6

LEU

GLN

ILE

SER

ASN

TRP

PHE

ILE

ASN

7

ALA

ARG

ILE

LEU

PRO

ASP

MET

LEU

8

GLN

ARG

ASN

ASP

PRO

SER

GLY

PRO

9

SER

GLY

Samples:

sample_1: homeobox domain, [U-13C; U-15N], 1.1 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.955, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2DMN
DBJ	BAF85298 BAG74238 BAG74239
EMBL	CAC87895 CAC87896 CAD20750 CAD20751
GB	AAI01145 AAI01146 AAI17399 AAI17401 AAI28605
REF	NP_001009067 NP_001266647 NP_620410 NP_631960 XP_003810418
SP	A1YGI6 Q8IUE0 Q8IUE1 Q8MIB7 Q8MIE9
AlphaFold	A1YGI6 Q8IUE0 Q8IUE1 Q8MIB7 Q8MIE9